10X Visium - Mouse Kidney 1

Mouse Kidney Whole Transcriptome Analysis

tenx_visium

Info

tenx_visium/visium/mouse_kidney_v1
10x Genomics (2020)
45.12 MiB
23-09-2024
1435 cells × 14322 genes

Used in

Description

10x Genomics obtained fresh frozen mouse kidney tissue from BioIVT Asterand. The tissue was embedded and cryosectioned as described in Visium Spatial Protocols - Tissue Preparation Guide Demonstrated Protocol (CG000240). Tissue sections of 10 µm thickness from a slice of the coronal plane were placed on Visium Gene Expression slides, then stained following the Methanol Fixation, H&E Staining & Imaging Demonstrated Protocol (CG000160).

Preview

dataset is an AnnData object with n_obs × n_vars = 1435 × 14322 with slots:

Reference

Name Description Type Data type Size
var
feature_id Unique identifier for the feature, usually a ENSEMBL gene id. vector object 14322
feature_name A human-readable name for the feature, usually a gene symbol. vector object 14322
layers
counts Raw counts sparsematrix float32 1435 × 14322
uns
dataset_description Long description of the dataset. atomic str 1
dataset_id A unique identifier for the dataset. This is different from the obs.dataset_id field, which is the identifier for the dataset from which the cell data is derived. atomic str 1
dataset_name A human-readable name for the dataset. atomic str 1
dataset_organism The organism of the sample in the dataset. atomic str 1
dataset_reference Bibtex reference of the paper in which the dataset was published. atomic str 1
dataset_summary Short description of the dataset. atomic str 1
dataset_url Link to the original source of the dataset. atomic str 1

References

10x Genomics. 2020. “Mouse Kidney Section (Coronal).” https://www.10xgenomics.com/datasets/mouse-kidney-section-coronal-1-standard-1-1-0.